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Broad Institute Inc cellprofiler software v4.2.5
Cellprofiler Software V4.2.5, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cellprofiler+software/cellprofiler/pm40664994-71-5-8
Average 90 stars, based on 1 article reviews
cellprofiler software v4.2.5 - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Software:

Article Title: Stem-cell-derived beta cells mature metabolically upon murine engraftment.
Article Snippet: Stained paraffin sections were imaged using Zeiss Axio Imager 2 with ApoTome. .. Image quantifications were performed using CellProfiler software version 4.2.4 (https:// cellp rofil er. org/ previ ous- relea ses, Broad Institute) [14]. ..

Article Title: Pulsatile low shear stress increases susceptibility to endothelial inflammation via upregulation of IFT and activation of YAP
Article Snippet: Confocal z-series were obtained consisting of 10 sections with a nominal z-spacing of 0.6 μ m. Maximum intensity projections were created, and the images analyzed using ImageJ (NIH) and CellProfiler software. .. The quantification of cellular localization of YAP and P65 based on confocal immunofluorescence was performed using CellProfiler software (Broad Institute), based on methods previously described (Fig. S10). ..

Article Title: AQP5 trafficking is regulated by its C-terminal tail and interaction with prolactin-inducible protein.
Article Snippet: Fluorescent images for hPIP labeling were acquired using a Leica DM microscope and a 20x objective. .. Quantification of the SNAP-hAQP5 constructs labelling in the cell perimembrane area was performed on original images using CellProfiler software (Broad Institute, Cambridge, MA, USA), applying consistent parameters across all conditions. ..

Article Title: Porcine Single-Eye Retinal Pigment Epithelium Cell Culture for Barrier and Polarity Studies.
Article Snippet: Imager.M2 (Carl Zeiss AG) with 20× lens was used for fluorescence imaging of different positions of the membranes. .. ZO-1 expression and cell nuclei were used to determine cell morphometry using the CellProfiler Software (version 4.2.8; Broad Institute of MIT and Harvard, Cambridge, MA, USA). ..

Article Title: Nimodipine protects Schwann and neuronal cells from cell death induced by cisplatin without affecting cancer cells.
Article Snippet: Subsequently, the cells were washed with Dulbecco’s phosphate buffered saline (PBS, Gibco, Scientific Reports | (2025) 15:20279 2| https://doi.org/10.1038/s41598-025-06854-5 Thermo Fisher Scientific, Waltham, MA, USA), 1 mL FluoroBriteTM DMEM (Gibco, Thermo Fisher Scientific, Waltham, MA, USA) was added and the cells were imaged using a Keyence BZ-800E microscope (Keyence, Neu-Isenburg, Germany). .. The quantification of cells stained with NucBlueTM and PI was conducted using the IdentifyPrimaryObjects function of the CellProfiler software (version 4.2.4, Broad Institute, Cambridge, MA, USA). .. The cells were seeded in 100 mm × 21 mm petri dishes (Techno Plastic Products, TPP, Trasadingen, Switzerland) and treated with 10 µM and 20 µM CIS with or without pre-treatment with 10 µM or 20 µM NIMO.

Article Title: Bioactive lipid mediator class switching regulates myogenic cell progression and muscle regeneration
Article Snippet: Images were then analyzed blindly using the ImageJ Analysis Software Program (version 1.53, National Institutes of Health, Maryland, USA). .. Myofiber size was analyzed using the MuscleAnalyzer pipeline of the CellProfiler Software (Broad Institute, MIT & Harvard, Cambridge, Massachusetts), and a minimum of 5000 myofibers was calculated per sample. .. Centro-nucleation was analyzed using the MyoSight macro of the ImageJ Analysis Software Program .

Article Title: A polytherapy approach demonstrates therapeutic efficacy for the treatment of SOD1 associated amyotrophic lateral sclerosis.
Article Snippet: Published Online xxx https://doi.org/10.. 1016/j.ebiom.2025.. 105692 A polytherapy approach demonstrates therapeutic efficacy for the treatment of SOD1 associated amyotrophic lateral sclerosis Jeremy S. Lum,a,b,∗ Mikayla L. Brown, Natalie E. Farrawell, Rachael Bartlett, Christen G. Chisholm, Jody Gorman, Anthony Dosseto, Florian Dux, Lachlan E. McInnes, Heath Ecroyd, Luke McAlary, Peter J. Crouch, Paul S. Donnelly, and Justin J. Yerbury

Article Title: LKB1 regulates JNK-dependent stress signaling and apoptotic dependency of KRAS-mutant lung cancers.
Article Snippet: Images were acquired using a Zeiss LSM 710 confocal microscope. .. Image analysis was performed using CellProfiler software (Broad Institute). ..

Immunofluorescence:

Article Title: Pulsatile low shear stress increases susceptibility to endothelial inflammation via upregulation of IFT and activation of YAP
Article Snippet: Confocal z-series were obtained consisting of 10 sections with a nominal z-spacing of 0.6 μ m. Maximum intensity projections were created, and the images analyzed using ImageJ (NIH) and CellProfiler software. .. The quantification of cellular localization of YAP and P65 based on confocal immunofluorescence was performed using CellProfiler software (Broad Institute), based on methods previously described (Fig. S10). ..

Construct:

Article Title: AQP5 trafficking is regulated by its C-terminal tail and interaction with prolactin-inducible protein.
Article Snippet: Fluorescent images for hPIP labeling were acquired using a Leica DM microscope and a 20x objective. .. Quantification of the SNAP-hAQP5 constructs labelling in the cell perimembrane area was performed on original images using CellProfiler software (Broad Institute, Cambridge, MA, USA), applying consistent parameters across all conditions. ..

Expressing:

Article Title: Porcine Single-Eye Retinal Pigment Epithelium Cell Culture for Barrier and Polarity Studies.
Article Snippet: Imager.M2 (Carl Zeiss AG) with 20× lens was used for fluorescence imaging of different positions of the membranes. .. ZO-1 expression and cell nuclei were used to determine cell morphometry using the CellProfiler Software (version 4.2.8; Broad Institute of MIT and Harvard, Cambridge, MA, USA). ..

Staining:

Article Title: Nimodipine protects Schwann and neuronal cells from cell death induced by cisplatin without affecting cancer cells.
Article Snippet: Subsequently, the cells were washed with Dulbecco’s phosphate buffered saline (PBS, Gibco, Scientific Reports | (2025) 15:20279 2| https://doi.org/10.1038/s41598-025-06854-5 Thermo Fisher Scientific, Waltham, MA, USA), 1 mL FluoroBriteTM DMEM (Gibco, Thermo Fisher Scientific, Waltham, MA, USA) was added and the cells were imaged using a Keyence BZ-800E microscope (Keyence, Neu-Isenburg, Germany). .. The quantification of cells stained with NucBlueTM and PI was conducted using the IdentifyPrimaryObjects function of the CellProfiler software (version 4.2.4, Broad Institute, Cambridge, MA, USA). .. The cells were seeded in 100 mm × 21 mm petri dishes (Techno Plastic Products, TPP, Trasadingen, Switzerland) and treated with 10 µM and 20 µM CIS with or without pre-treatment with 10 µM or 20 µM NIMO.



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